Manuscripts

This reflects the past 5 years

[(a)=refereed, (b)=non-refereed, *=supervising author, (c)= chapter, (i)=invited, (e)=editor, (k) = book]

2018

  • (a)Lawton, Samantha, Allison M. Weis, Barbara A. Byrne, Heather Fritz, Conor Taff, Andrea Townsend, Bart C. Weimer, Asli Mete, Sarah Wheeler, Walter M. Boyce. 2018. Comparative analysis of Campylobacter isolates from wild birds and chickens using MALDI-TOF, biochemical testing, and sequence analysis. Journal of Veterinary Diagnostic Investigation. In press.
  •  (a)*Foutouhi, Soraya H., Nuradilla Mohamad-Fauzi, Dylan Storey, Azarene A. Foutouhi, Nguyet Kong, Amir Kol, Dori Borjesson, Prerak Desai, Jigna Shah, James D. Murray and Bart C. Weimer. 2018. Salmonella enterica ssp enterica serotype Typhimurium Enhances Osteogenic Differentiation in Adipose-Derived Mesenchymal Stem Cells. Stem Cells. In Press.
  • (aci)*Kaufman, James H.*, Christopher A. Elkins, Matthew Davis, Allison M. Weis, Bihua C. Huang, Mark K. Mammel, Isha R. Patel, Kristen L. Beck, Stefan Edlund, David Chambliss, Judith Douglas, Simone Bianco, Mark Kunitomi, Bart C. Weimer*. 2018. Insular Microbiogeography. In Microbial Ecology: Current advances from genomics, metagenomics and other “omics”. Edited by Diana Marco. Caister Academic Press, Poole, UK. *co-supervising authors
  • (a)*Kong, Nguyet, Azarene Foutouhi, B. Carol Huang, Narine Arabyan, Kao Thao, Whitney Ng, Dylan Storey, Lucy Cai, Eric Lee, Richard Jeannotte, Lenore Kelly, Bart C. Weimer. 2018. A Next Generation Sequencing Library Workflow for Foodborne Pathogens with Quality Control Parameters for Quantification and Shearing conditions using the Agilent 2200 TapeStation System. Standards in Genomics. In Press.
  • (a)Zamuruyev, Konstantin O, Eva Borras, Dayna R Pettit, Alexander A Aksenov, Jason D Simmons, Bart C Weimer, Michael Schivo, Nicholas J Kenyon, Jean-Pierre Delplanque, Cristia Davis. 2017. Effect of collection temperature on metabolite content in exhaled breath condensate. Analytica Chimica Acta. In Press.

2017

  • (ai)*Chen, Poyin, Taylor Reiter, Bihua Huang, Nguyet Kong, and Bart C. Weimer. 2017. Prebiotic oligosaccharides potentiate host protective responses against Listeria monocytogenes infection. Pathogens 6:68 (invited contribution in – Special issue on Listeria monocytogenes and host interactions; Feature Article). (DOI:10.3390/pathogens6040068; PMID: 29257110)
  • (ai)* Weis, Allison M. and Bart C. Weimer. 2017. The journey of Campylobacter: a genomic analysis of a successful zoonotic pathogen. Atlas of Science (http://atlasofscience.org/the-journey-of-campylobacter-a-genomic-analysis-of-a-successful-zoonotic-pathogen/#more-22426).
  • (a) Borras, Eva; Aksenov, Alexander; Baird, Mark; Novick, Brittany; Schivo, Michael; Zamuruyev, Konstantin; Pasamontes, Alberto; Parry, Celeste; Foutouhi, Soraya; Venn-Watson, Stephanie; Weimer, Bart C.; Davis, Cristina. 2017. Exhaled breath metabolomic longitudinal study for an early prediction of health alterations in dolphins. Analytical and Bioanalytical Chemistry. In press. (highlight paper for issue) (PMID: 29063162)
  • (a) Lawton, Samantha, Allison M. Weis, Barbara A. Byrne, Heather Fritz, Conor Taff, Andrea Townsend, Bart C. Weimer, Asli Mete, Sarah Wheeler, Walter M. Boyce. Comparative analysis of Campylobacter isolates from wild birds and chickens using MALDI-TOF, biochemical testing, and sequence analysis. Journal of Veterinary Diagnostic Investigation. In press.
  • (a) Stevens, John R., Todd R. Jones, Michael Lefevre, Balasubramanian Ganesan, and Bart C. Weimer. 2017. SigTree: identifying and visualizing significantly responsive branches in a phylogenetic tree. Computational and Structural Biology Journal 15:372-376. (PMID:28748045)
  •  (a)* Arabyan, Narine, Bihua C. Huang and Bart C. Weimer. 2017. Draft genomes of Salmonella enterica sv Typhimurium LT2 with deleted chitinases that are emerging virulence factors. Genome Announcements 5:e00659-17 (PMID:28774970).
  • (ai)* Weimer, Bart C. 2017. 100K Pathogen Genome Project. Genome Announcements 5:e00594-17 (invited commentary) (PMID: 28705971)
  • (a)*Kong, Nguyet, Narine Arabyan, Kao Thao, Whitney Ng, Bihua C. Huang, Dylan Bobby Storey, Poyin Chen, Allison M. Weis, Soraya Foutouhi, Azarene Foutouhi, Yi Xie, and Bart C. Weimer. 2017. Draft genome sequences of 1183 Salmonella from the 100K Pathogen Genome Project. Genome Announcements 5:e00518-17. (PMID: 28705963).
  • (a)*Arabyan, Narine, Bihua C. Huang and Bart C. Weimer. 2017. Draft Genomes of Salmonella lysozyme knockouts. Genome Announcements 5:e00519-17. (PMID: 28596411).
  • (ai) Rheault, Jean-Guillaume Emond, Julie Jeukens, Luca Freschi, Irena Kukavica-Ibrulj, Brian Boyle, Marie-Josée Dupont, Anna Colavecchio, Virginie Barrere, Brigitte Cadieux, Maud Kerhoas, Alanna Crouse, Lei Zhu, Line Larivière, Ana Victoria Pilar, Camille Cavestri, Travis K. Chapin, Denise Tremblay, Caroline Vincent, Eric Fournier, Khadija Youfsi, Ida Ngueng-Feze, Lingqiao Song, Valentine Usongo, Florence Doualla-Bell, Chrystal Berry, Aleisha R. Reimer, Nguyet Kong, Carol B. Huang, Karen Fong, Emily D. Wilson, Kakali Mukhopadhyay, Walid Mottawea, Dele Ogunremi, Hongsheng Huang, Gitanjali Arya, Ann Perets, Catherine Yoshida, James Robertson, Joel Weadge, Michelle D. Danyluk, John Rohde, Rafael Garduno, Siyun Wang, Céline Nadon, Paul Thomassin,Yann Joly, Ismail Fliss, Gisèle Lapointe, Linda Harris, Roger Stephan, Elton Burnett, Sylvain Moineau, Sandeep Tamber, Sadjia Bekal, France Daigle, Samantha Gruenheid, Danielle Malo, Thomas Wittum, Pascal Delaquis, Alexander Gill, Kenneth E. Sanderson, Martin Wiedmann, Eelco Franz, Lucas Wijnands, Bart C. Weimer, Lawrence Goodridge, and Roger C. Levesque. 2017. A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. Frontiers in Microbiology 8:996. (PMID: 28626454) Special issue on food safety
  • (a)* Arabyan, Narine, Allison M. Weis, Bihua C. Huang and Bart C. Weimer. 2017. Implications of sialidases in diseases: Genome release of Salmonella sialidase knockout strains. Genome Announcements 5:e00341-17. (PMID: 28495784)
  • (a)* Arabyan, Narine, Bihua C. Huang and Bart C. Weimer. 2017. Amylases and their importance during glycan degradation: Genome sequence release of Salmonella amylase knockout strains. Genome Announcements 5:e00355-17. (PMID: 28522713)
  • (a)* Kaufman, James H., Christopher A. Elkins, Matthew Davis, Allison M Weis, Bihua C. Huang, Mark K Mammel, Isha R. Patel, Kristen L. Beck, Stefan Edlund, David Chambliss, Simone Bianco, Mark Kunitomi, Bart C. Weimer*. 2017. Microbiogeography and microbial genome evolution. arXiv:1703.07454 [q-bio.GN]. *co-corresponding author
  • (a)* Weis, Allison M., Brent Gilpin, Bihua C. Huang, Nguyet Kong, Poyin Chen, and Bart C. Weimer. 2017. Shigella draft genomes: resources for food safety and public health. Genome Announcements 5:e00176-17. (PMID: 28428292)
  • (a)* Weis, Allison M., Kristen A. Clothier, Bihua C. Huang, Nguyet Kong, and Bart C. Weimer. 2017. Multidrug resistant abortive Campylobacter jejuni draft genome from Northern California. Genome Announcements 5:e00171-17. (PMID: 28408683)
  • (a) Draper, Jenny L., Lori M. Hansen, David Bernick, Samar Abedrabbo, Jason G. Underword, Nguyet Kong, Carol B. Huang, Allison M. Weis, Bart C. Weimer, Arnoud Van Vliet, Nader Pourmand, Jay V. Solnick, Kevin Karplus, Karen M. Ottemann. 2017. Fallacy of the unique genome: Sequence diversity within single Helicobacter pylori strains. mBio 8:e02321-16. (PMID: 28223462).
  • (a)* Chen, Poyin, Nguyet Kong, Bihua Huang, Kao Thao, Whitney Ng, Dylan Bobby Storey, Narine Arabyan, Azarene Foutouhi, Soraya Foutouhi, and Bart C. Weimer. 100K Pathogen Genome Project: 306 Listeria draft genomes for food safety and public health. 2017. Genome Announcements 5:e00967-16. (PMID: 28183778).
  • (a)* Aksenov, Alexander, Konstantin Zamuruyev, Alberto Pasamontes, Joshua Brown, Michael Schivo, Soraya Foutouhi, Bart C. Weimer, Nicholas Kenyon, and Cristina Davis. 2017. Analytical methodologies for broad metabolic coverage of exhaled breath condensate. J. Chrom B. 1061-1062:17-25. (PMID: 28697414)
  • (a)* Kong, Nguyet, Azarene Foutouhi, B. Carol Huang, Narine Arabyan, Kao Thao, Whitney Ng, Dylan Storey, Lucy Cai, Eric Lee, Richard Jeannotte, Lenore Kelly, Bart C. Weimer. 2017. A Next Generation Sequencing Library Workflow for Foodborne Pathogens with Quality Control Parameters for Quantification and Shearing conditions using the Agilent 2200 TapeStation System. Standards in Genomics (in press).
  •  (a)* Foutouhi, Soraya H., Nuradilla Mohamad-Fauzi, Dylan Storey, Azarene A. Foutouhi, Nguyet Kong, Amir Kol, Dori Borjesson, Prerak Desai, Jigna Shah, James D. Murray and Bart C. Weimer. 2017. Salmonella enterica ssp enterica serotype Typhimurium Enhances Osteogenic Differentiation in Adipose-Derived Mesenchymal Stem Cells. Stem Cells (in press).
  • (a)* Kong, Nguyet, Whitney Ng, Kao Thao, Regina Agulto, Allison Weis, Kristi Spittle, and Bart C. Weimer. 2017. Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing. Standards in Genomics. 12:27-37 (PMID: 28344744). (highly accessed notation by journal)
  • (a)* Weis, Allison M., Bihua C. Huang, Dylan B. Storey, Nguyet Kong, Poyin Chen, Narine Arabyan, Brent Gilpin, Carl Mason, Andrea K. Townsend, Woutrina A. Miller, Barbara A. Byrne, Conor C. Taff, and Bart C. Weimer. 2017. Large-scale release of Campylobacter draft genomes; resources for food safety and public health from the 100K Pathogen Genome Project. Genome Announcements 5(1):e00925-16. (PMID: 28057746).
  • (a)* Chen, Poyin, Henk C. den Bakker, Jonas Korlach, Meredith Ashby, Tyson Clark, Khai Luong, R. J. Roberts, Martin Wiedmann, and Bart C. Weimer. 2017. Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes. App. Environ. Microbiol. 83:e02091-16. (PMID: 27836852).
  • (a)* Weis, Allison M., Kristin A. Clothier, Bihua C. Huang, Nguyet Kong, Jessica Wasserscheid, Ken Dewar, Bart C. Weimer. 2017. Comparative Genomics of Abortive Campylobacter jejuni Isolates from Multiple Hosts. (submitted) AEM
  • (a)* Doherty, Matthew K., Prerak T. Desai, Leslie Woods, Mai Lee Yang, Janneth Pinzon, Nguyet Kong, and Bart C. Weimer. 2017. Vancomycin and aptamer treatment in vivo are synergistic to inhibit Staphylococcus aureus. (in revision) virulence
  • (a)* Chen, Poyin, Prerak T. Desai, Dong Chen, Jigna Shah, and Bart C. Weimer. 2017. Whole cell cross-linking to discover host-microbe protein receptor/ligand pairs. (re-submitted). Frontiers in Microbiology 8/4/17
  • (ai)* Chen, Poyin, Taylor Reiter, Bihua Huang, Nguyet Kong, and Bart C. Weimer. 2017. Prebiotic oligosaccharides potentiate host protective responses against Listeria monocytogenes infection. (Submitted) (invited contribution in Special issue on Listeria monocytogenes and host interactions).
  • (a)* Kaufman, James*, Huang, Mark K Mammel, Isha R. Patel, Kristen L. Beck, Stefan Edlund, David Chambliss, Simone Bianco, Bart C. Weimer*. 2017. Genomic diversity of microbes. Submitted *co-corresponding author mSphere – resubmit 9/25/17
  • (a)  Zamuruyev, Konstantin O, Eva Borras, Dayna R Pettit, Alexander A Aksenov, Jason D Simmons, Bart C Weimer, Michael Schivo, Nicholas J Kenyon, Jean-Pierre Delplanque, Cristia Davis. 2017. Effect of collection temperature on metabolite content in exhaled breath condensate. (submitted) Analytica Chimica Acta
  • (a)* Kong, Nguyet, Whitney Ng, Vivian Lee, Poyin Chen, Lenore Kelly, and Bart C. Weimer. 2017. Comparing Various DNA Extraction Methods to Obtain High Molecular Weight Genomic DNA in Listeria monocytogenes for Next Generation Sequencing Pipelines. (submitted). Biotechniques – 1/31/17
  • (a)* Kong, Nguyet, Whitney Ng, Lucy Cai, Alvin Leonardo, Patrick Ancheta, B. Carol Huang, Kao Thao, Azarene Foutouhi, Lenore Kelly and Bart C. Weimer. 2017. KAPA Biosystems HTP Library Preparation Kit Using Agilent Electrophoresis Instruments for Quality Control of Library Construction Pipeline. (submitted). Biotechniques – 1/31/17
  • (a)*Dhanasekaran, A. Ranjitha and Bart C. Weimer. 2017. DynaFlux: a software tool to estimate the dynamic state flux of a metabolic network and to perform network analyses. (in revision). mSystems

2016

  • (a) Zamuruyev, Konstantin, Alexander Aksenov, Alberto Pasamontes, Josh Brown, Dayna Pettit, Soraya Foutouhi, Bart C. Weimer, Michael Schivo, Nicholas Kenyon, Jean-Pierre Delplanque, Cristina Davis. 2016. Human breath metabolomics using an optimized non-invasive respiratory sampler for health diagnostics. Journal of Breath Research 11(1):016001. (PMID: 27689905)
  • (a)* Weis, Allison M., Kristin A. Clothier, Bihua C. Huang, Nguyet T. Kong, and Bart C. Weimer. 2016. Campylobacter jejuni that cause abortion in livestock. Genome Announcements 4(6):e01324-16. (PMID: 27908990)
  • (a)* Park, Dayoung, Narine Arabyan, Cynthia C. Williams, Ting Song, Anupam Mitra, Bart C. Weimer, Emanual Maverakis, and Carlito B. Lebrilla. 2016. Salmonella Typhimurium enzymatically landscapes the host intestinal epithelial cell surface glycome to increase invasion. Molecular and Cellular Proteomics 15(12):3653-3664 (PMID: 27754876)
  • (a)* Weis, Allison M., Dylan B. Storey, Conor C. Taff, Andrea K. Townsend, Bihua C. Huang, Nguyet T. Kong, Kristin A. Clothier, Abigail Spinner, Barbara A. Byrne, Bart C. Weimer. 2016. Genomic comparison of Campylobacter spp. and their potential for zoonotic transmission between birds, primates, and livestock. App. Environ. Microbiol. 82: 7165-7175. (PMID: 27736787)
  • (a) Zamuruyev, Konstantin; Alexander Aksenov; Mark Baird; Alberto Pasamontes; Celeste Parry; Soraya Foutouhi; Stephanie Venn-Watson; Bart C. Weimer; Jean-Pierre Delplanque; Cristina Davis. 2016. Enhanced non-invasive respiratory sampling from bottlenose dolphins for optimum breath metabolomics measurements. Journal of Breath Research 10(4):046005. (PMID: 27689905)
  • (a) Hu, Yongfei, Xi Yang, Jing Li, Na Lv, Fei Liu, Jun Wu, Ivan Lin, Na Wu, Bart C. Weimer, George Gao, Yulan Liu, Baoli Zhu. 2016. The transfer network of bacterial mobile resistome connecting animal and human microbiome. App. Environ. Microbiol. 82:6672-6681 (PMID: 27613679)
  • (a) Taff, Conor C., Allison M. Weis, Chris Barker, Walter M. Boyce, Mitchell G. Hinton, Melissa Jones, Ryane Logsdon, Woutrina A. Smith, Bart C. Weimer, Sarah Wheeler, and Andrea K. Townsend 2016. Influence of host ecology and behavior on Campylobacter jejuni prevalence and environmental contamination risk in a synanthropic wild bird. App. Environ. Microbiol. 82:4811-4820. (PMID: 27260356)
  • (a)* Arabyan, N., D. Park, C. Williams, R. Jeannotte, P. Desai, J. Shah, N. Kong, M. L. Yang, C. Lebrilla, and Bart C. Weimer. 2016. Glycan degradation during Salmonella enterica spp. enterica sv Typhimurium infection. Sci. Rep. 6:29525 (doi: 10.1038/srep29525). (PMID:27389966)
  • (ai)* Edlund, Stefan, Kristen L. Beck, Niina Haiminen, Laxmi Parida, Dylan Bobby Storey, Bart C. Weimer, James H. Kaufman, David Chambliss. 2016. Design of the MCAW Compute Service for Food Safety Bioinformatics. IBM Journal of Research and Development, 60 (5/6):2.1-2.12 (DOI: 10.1147/JRD.2016.2584798)
  • (ai)*  Weimer, Bart C., Dylan Bobby Storey, Christopher A. Elkins, Robert C. Baker, Peter Markwell, David Chambliss, Stefan Edlund, James H. Kaufman. 2016. Defining the food microbiome for authentication, safety, and process management.  IBM Journal of Research and Development, 60 (5/6):1.1-1.13. (DOI: 10.1147/JRD.2016.2582598)
  • (a)  Pandey, Pramod, Mark Lejeune, Sagor Biswas, Daniel Morash, Bart C. Weimer, Glenn Young. 2016. A new method for converting food waste into pathogen-free soil amendment for enhancing agricultural sustainability. Journal of Cleaner Production 112:205-213. (DOI: 10.1016/j.jclepro.2015.09.045)

2015

  • (ai)** Miller, Bronwen, Beverley van Rooyen, Heather Whitehorn, Piet Jones, Martin Ranik, Eric van der Walt, Maryke Appel, Nguyet Kong, Carol Huang, Dylan Storey, Bart C. Weimer. 2015, A novel, single-tube enzymatic fragmentation and library construction method enables fast turnaround times and improved data quality for microbial whole-genome sequencing. Kapa Biosystems Application Note (072314 KK1234; DOI: 10.13140/RG.2.1.4534.3440).
  • (ai)* Kong, Nguyet, Whitney Ng, and Bart C. Weimer. 2015. Quality Control of Library Construction Pipeline for PacBio SMRTbell 10kb Library Using Agilent 2200 TapeStation. Agilent Technologies application note (5991-6521EN; DOI: 10.13140/RG.2.1.4339.4644)
  • (aci)* Ganesan, Balasubramanian and Bart C. Weimer. 2015. Biotechnology of flavor formation in fermented dairy products. In Biotechnology in Flavor Production, 2nd Edition. pp. 133-158. Edited by Daphna Havkin-Frenkel and Nativ Dudai. Wiley Press, Singapore. ISBN 978-1-118-35406-3
  • (a) Lüdeke, Catharina H.M., Nguyet Kong, Bart C. Weimer, Markus Fischer, Jessica L. Jones. 2015. Complete genome sequences of a clinical and an environmental Vibrio parahaemolyticus isolate. Genome Announcements. 3(2):e00216-15. (PMID: 25814612)
  • (a)*Dhanasekaran, A. Ranjitha, Jon L. Pearson, Balasubramanian Ganesan, and Bart C. Weimer. 2015. Metabolome Searcher: A high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and metabolites. BMC Bioinformatics 16:62 (DOI: 10.1186/s12859-015-0462-y). (PMID: 25887958)
  • (a) Wende, Adam R., Brian T. O’Neill, Heiko Bugger, Joseph Tuinei, Jonathan Buchanan, Pilar Caro-Martin, Aili Guo, Crystal Sloan, Bum Jun Kim, Xiaohui Wang, Renata O. Pereira, Tetsuo Shioi, Bart C. Weimer, and E. Dale Abel. 2015. Enhanced cardiac Akt/protein kinase B signaling contributes to pathological cardiac hypertrophy in part by impairing mitochondrial function via transcriptional repression of mitochondrion-targeted nuclear genes. Mol Cell Bio 35:831-46. (PMID: 25535334)
  • (a) Worden, Natasha, Thomas E. Wilkop, Victor Esteva Esteve, Richard Jeannotte, Rahul Lathe, Samantha Vernhettes, Bart C. Weimer, Glenn Hicks, Jose Alonso, John Labavitch, Staffan Persson, David Ehrhardt, Georgia Drakakaki. 2015. CESTRIN, inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CSI1. Plant Physiology 167: 381-93. (PMID: 25535279)

2014

  • (ai)* Kong, Nguyet, Whitney Ng, Lucy Cai, Alvin Leonardo, and Bart C. Weimer. 2014. Integrating the DNA Integrity Number (DIN) to Assess Genomic DNA (gDNA) Quality Control Using the Agilent 2200 TapeStation System. Agilent Technologies application note (5991-5442EN; DOI: 10.13140/RG.2.1.3616.8409).
  • (ai)* Kong, Nguyet, Whitney Ng, Azarene Foutouhi, B. Carol Huang, and Bart C. Weimer. 2014. Quality Control of High-Throughput Library Construction Pipeline for KAPA HTP Library Using an Agilent2200 TapeStation. Agilent Technologies application note (5991-5141EN; DOI: 10.13140/RG.2.1.4927.5604).
  • (ai)* Jeannotte, Richard, Eric Lee, Narine Arabyan, Nguyet Kong, Kao Thao, Carol Huang and Bart C. Weimer. 2014. Optimization of Covaris settings for shearing bacterial genomic DNA by focused ultrasonication and analysis using Agilent 2200 TapeStation. Agilent Technologies application note. (5991-5075EN; DOI: 10.13140/RG.2.1.4424.1444).
  • (ai)* Jeannotte, Richard, Eric Lee, Nguyet Dao Kong, Whitney Ng, and B. C. Weimer. 2014. High-Throughput Analysis of Foodborne Bacterial Genomic DNA Using Agilent 2200 TapeStation and Genomic DNA ScreenTape System. Agilent Technologies application note. (5991-4003EN; DOI: 10.13140/RG.2.1.3354.6961).
  • (ai)* Kong, Nguyet, Kao Thao, Whitney Ng, Kristi Spittle Kim, Jonas Korlach, Luke Hickey, Lenore Kelly, Stephen Lappin, and Bart C. Weimer. 2014. Automation of PacBio SMRTbell 10 kb Template Preparation on an Agilent NGS Workstation. Agilent Technologies application note. (5991-4482EN; DOI: 10.13140/RG.2.1.4403.2725).
  • (ai)* Kong, Nguyet, Kao Thao, Carol Huang, Maryke Appel, Stephen Lappin, Lisa Knapp, Lenore Kelly, and B. C. Weimer. 2014. Automated Library Construction Using KAPA Library Preparation Kits on the Agilent NGS Workstation Yields High-Quality Libraries for Whole-Genome Sequencing on the Illumina Platform. Agilent Technologies application note (5991-4296EN; DOI: 10.13140/RG.2.1.2306.1203).
  • (a) Bua-In, S., Y. Paisooksantivatana, B. C. Weimer, S. Chowpongpang. 2014. Molecular cloning and expression levels of the monoterpene synthase gene (ZMM1) in cassumunar ginger (Zingiber montanum (Koenig) Link ex Dietr.). Archives of Biological Sciences 66:1321-1331.
  • (aci) Marie-Pierre Forquin-Gomez, Bart C. Weimer, Louis Sorieul, Jorn Kalinowski, and Tatiana Vallaeys. 2014. The family Brevibacteriaceae. In The Prokaryotes: Actinobacteria (4th Ed), pp. 141-153. Ed. Eugene Rosenberg, Edward F. DeLong, Dr. Stephen Lory, Prof. Erko Stackebrandt, Fabiano Thompson. Springer, Berlin Heidelberg. ISBN: 978-3-642-30193-3
  • (a) Ferreyra, Jessica, Katherine Wu, Donna Bouley, Bart C. Weimer, and Justin L. Sonnenburg. 2014. Gut microbiota-produced succinate promotes Clostridum difficile infection after antibiotics or motility disturbance. Cell Host Microbe. 16(6):770-7. (PMID: 25498344).
  • (a)* Ganesan, B. and Bart C. Weimer. 2014. Amino acid catabolism. In Cheese: Chemistry, Physics & Microbiology. Volume 1, 4th Edition. Edited by P.F. Fox, P.L.H. McSweeney, D.W. Everett and P. Cotter. Elsevier, Oxford.
  • (a)* Shah, Jigna, Prerak T. Desai, & Bart C. Weimer. 2014. Genetic mechanisms underlying pathogenicity of cold-stressed Salmonella Typhimurium in cultured intestinal epithelial cells. Appl. Environ. Microbiol. 80:6943-53. (PMID: 25192993)
  • (a)* Kol, A., S. Foutouhi, N.J. Walker, N.T. Kong, B.C. Weimer*, and D.L. Borjesson*. 2014. Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. Stem Cells and Development 23:1831-43 (PMID: 24803072). *co-corresponding authors.
  • (ai)* Chen, Poyin, Richard Jeannotte, and Bart C. Weimer. 2014. Exploring Bacterial Epigenomics in the NGS Era—A New Approach for an Emerging Frontier. Trends in Microbiology 22:292–300. (Invited reviewed submission for -omics special issue). (PMID: 24725482)
  • (a) Deng, Xiangyu, Prerak T. Desai, Henk C. den Bakker, Matthew Mikoleit, Beth Tolar, Eija Trees, Rene S. Hendriksen, Jonathan Frye, Steffen Porwollik, Bart C. Weimer, Martin Wiedmann, George M. Weinstock, Michael McClelland, Patricia I. Fields. 2014. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerging and Infectious Diseases. 20:1481-9. (PMID: 25147968)
  •  (a)* Ganesan, Balasubramanian, Bart C. Weimer, Nguyet Dao, Janneth Pinzon, Giovanni Rompato, Carl Brothersen, and Donald J. McMahon. 2014. Probiotic bacteria survive in Cheddar cheese and modify populations of other lactic acid bacteria. J. Appl. Microbiol. 116:1642–1656. (co-first authorship) (PMID: 24905221)