Nature – Pathogens
- Asymptomatic infection and antibody prevalence to co-occurring avian influenza viruses vary substantially between sympatric seabird species following H5N1 outbreaks January 9, 2025
- Impact of RSVpreF vaccination on reducing the burden of respiratory syncytial virus in infants and older adults January 9, 2025
- Neutralization of omicron subvariants and antigenic cartography following multiple COVID 19 vaccinations and repeated omicron non JN.1 or JN.1 infections January 9, 2025
- Incremental benefit of high dose compared to standard dose influenza vaccine in reducing hospitalizations January 9, 2025
- Disruption of seasonal influenza circulation and evolution during the 2009 H1N1 and COVID-19 pandemics in Southeastern Asia January 8, 2025
Nature – AMR
- Biochar filtration of drug-resistant bacteria and active pharmaceutical ingredients to combat antimicrobial resistance January 8, 2025
- Antimicrobial susceptibility profiles of Mycoplasma hyosynoviae strains isolated from five European countries between 2018 and 2023 January 7, 2025
- Longitudinal monitoring of sewershed resistomes in socioeconomically diverse urban neighborhoods January 7, 2025
- Aztreonam-avibactam: a new combination with activity against multidrug-resistant Klebsiella pneumoniae complex January 7, 2025
- Methionine-driven methylation modification overcomes plasmid-mediated high-level tigecycline resistance January 6, 2025
Outbreaks
CDC
- Expanded Recommendations for Use of Pneumococcal Conjugate Vaccines Among Adults Aged ≥50 Years: Recommendations of the Advisory Committee on Immunization Practices — United States, 2024 January 8, 2025
- Occupational Exposure to Mercury at an Electronics Waste and Lamp Recycling Facility — Ohio, 2023 January 8, 2025
Food Safety News
- CDC declares Salmonella outbreak over; more than 100 sickened by cucumbers January 9, 2025
- Pickled eggs linked to Chinese botulism cases January 9, 2025
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Category Archives: Genomics
Day Zero for Bacterial Comparative Genomics
Contributed by Darwin Bandoy DVM Learning microbiology is hard, learning genomics is hard and the learning curve is not simply exponential but factorial for learning bacterial genomics. I had the advantage of being a veterinarian with a training in microbiology … Continue reading
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Thoughts about Genome Distance Analysis for Pathogen Outbreak Isolates
Contributed by Carol Huang The recent work on bioinformatics analysis of pathogen strains from outbreaks made me consider the aspects that can be used for this type of analysis. When we are facing a pathogen outbreak, the first thing we … Continue reading
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CLC Genomics Workbench as a Tool Next Generation Sequencing Data
Contributed by Nguyet Kong CLC Genomics Workbench was designed to assist with many different Next Generation Sequencing bioinformatics applications from RNAseq, Transcriptomics, Metagenomics, Epigenomics and de novo assembly. The CLC Genomics Workbench is a user-friendly software that is easily used by … Continue reading
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Alli’s QuickStart Genomics User Guide: How To Get On The Bus!
Contributed by Allison Weis The big scary world of genomics, when first entering, can be overwhelming to say the least. But with a deep breath and these tools, you’ll soon be whizzing down ATG Avenue with the other polymerases. First, … Continue reading
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100k Genome Project named in GenomeWeb Article
Outbreak Tracking, Infectious Disease Diagnostics Becoming Key Applications for NGS Dec 28, 2015 | Monica Heger Premium NEW YORK (GenomeWeb) – In 2011, experts predicted that within five to 10 years, clinical microbiology labs would routinely sequence microbial genomes on a next-generation … Continue reading
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Recently food regulatory agencies have moved to using genomics for regulation
Contributed by Bart C. Weimer, PhD Recently food regulatory agencies have moved to using genomics for regulation. Coupled to that move the FDA announced finalization of the Foreign Supplier Verification Program using the authority extended to them via FSMA. These two major changes … Continue reading
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